PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG538800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 224aa    MW: 24596.7 Da    PI: 4.6536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG538800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-1355101455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ e+ErrRR r+Ns +  Lr ++P+      +K+sK ++L  A+++Ik+Lq
  Pavir.2NG538800.1.p  55 KNLEAERRRRGRLNSNILALRAVVPNI-----TKMSKESTLSDAIDHIKKLQ 101
                          56799*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.17E-1349104No hitNo description
SuperFamilySSF474596.02E-1751116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.21851100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1453112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1054101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-1457106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPRRQRARSS EELKAEDFVD SVLNFGGGAE GEEEEEEGEA GGGDGQPAPT EYKSKNLEAE  60
RRRRGRLNSN ILALRAVVPN ITKMSKESTL SDAIDHIKKL QNQVLELQQQ LADSPGEAWE  120
KQGSASCSES FAATENMPFQ GQVELVPLGP YKYHLKIFCK KAGIFTKVLE ALCSYNAQVT  180
SLSTITFYGY AESVFCIEVK GEQDVVMVEL RSLLSSIVEV PNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0684940.0BT068494.1 Zea mays full-length cDNA clone ZM_BFb0227D06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460833.11e-136hypothetical protein SORBIDRAFT_02g035870
SwissprotB9FXT33e-92UDT1_ORYSJ; Transcription factor UDT1
TrEMBLK4A1H41e-136K4A1H4_SETIT; Uncharacterized protein
STRINGSi032717m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-17bHLH family protein